CDS

Accession Number TCMCG007C06206
gbkey CDS
Protein Id XP_009135297.1
Location join(6543568..6544260,6544344..6544812,6544905..6544990,6545090..6545203,6545295..6545483,6545577..6545642,6545815..6545868,6545996..6546121,6546243..6546359,6546523..6546630,6546710..6546836,6547104..6547235,6547423..6547596,6547678..6547958,6548134..6548277,6548526..6548703,6548795..6549024,6549106..6549295,6549368..6549593,6549682..6549837,6549968..6550055)
Gene LOC103859500
GeneID 103859500
Organism Brassica rapa

Protein

Length 1315aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009137049.3
Definition abnormal spindle-like microcephaly-associated protein homolog isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category Z
Description Calponin homology (CH) domain
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K16743        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGAATGAAGAAAACGAACCAACGTGCGCTACACCAGCGACGCGGCCGCGTAATCCTCCGTCATCACACTTCACCGACATATCCAATTTCAAAACTCCGCGGCGTCCTTCCGTTATCAAATCAAATCTCGGCAACACTCCTCAATTCTTCACCGCATCTAAACAAACTCCCAAATCTATGTCCTCCACCTTCCGCCGTCCCTCACTCCTTCCTACTCACGCGTCTCGCTCCAAGGTCGCAGCTTCCTCGAGGCGGCTTAGGGCATTCGAGCTTCAGCAATCGCAGTCTTCTCGCAAGGCTGAGTTGAATAAAGAGAAGAGCCTTAGATCTCTCGCTAAGTCACTCACCGTGTGGCTCAATTTCTTGTTCGAAAACCCTGAAAGTTGCGGTTGCGATCCGTTAGAGAATGGCTCTGCTGTTGGTAGCGTCGGAAATGCGAAGAGAGATAGTTGCGAGGCTTTGCGAAGCGGTAAATCAGTGGGAGTGGATACGATGTGGCGTAGCCCCAAAAAGTCGAGGACTTTAGGTTGGTGTGGTGAGAAAGGATCATCCTTGAGTGGCTCCAAGTATTCAACGCTGAGGGAGTCTTTGAAAGAAGTTTGTAGCTTAGATGATTTGAAGCAGAGGATGCAGTTTCACTTGAGTTTGGGAAGTTGCAAGGAGATTTTCGATGTGATGACCCGTGTTACCAAGAATATCGATGAAGGGAGGATAAAGATGAAACCACAATGCCTTCTTGTAACTGATTTTGGACTGAAGGAGAAGGCCGTCAAGGCACTGATGTGTTACAACCAAGTTTGGCTTCGTCTAGGGTTGTATATCATCTTTGGCGGTGATTCCTTTTTGTGTGACAGCGAAGTTAACTCAGATCAAGAAACGGCATTCTTGAAGATGGTAATCAACAAGCAGTTTTTCTCCCATGACGGCCTTGCTAGAGCCTTTGCCTATAACAAGATGGTTGAGGGTTTATACAGACCAGGGTACTATGAAGCCCTTGGAACCGTGATTTTGAAGAGGATTCTGTTGCTTGTCCTTATATTAGATAGAGCTAAATCTCAAAGCTGTATTTCACTCAAGTATGGGATTGATGGGATAGATGGTGGCTCTCCCCTCTTGTTTTCAGAGAAATCTAGCTTAAAGTCTAGCCATCAACTTCTAAGTGAACTCCTGCCCTCTGATGTAATGCATGGAGAAGGGAATCTCCTAGCGCATCTAGTGATTATAGGGTACAAAATACCTTATCAGCAGTCTCCTATAGCTGAATATGAATTTAGAGTGAGAGACTTGTTTGGTGACCTCCAAGATGGCGTGCGGCTCTGCAGAGCCATTCAACTACTTCTTCATGATCCATCCATTCTCACGAAAATGGTAGTTCCATCCGACAATCGAAAGAAGAAGTTGGCCAACTGTAGAGTTGCACTTCAGTATCTGAAGGATGCTGGTGTTTCATTGAAAGATGACGAAGGAATGATGATAACTATAGAAGATGTTGCAGATGGTGACAGAGAGCTCTCTATTTCACTGCTATGGAACATTTTTGTACATTTGCAGCTACCTCTTCTGATCAATGGGAAACTCTTGACAGAGGAAATCTACAAAGTCCAGGGGCTGGAACAGAATAATCAAATTATCATGGCTACTCCTCTGGAAATGCTCTTGAACTGGATCCAGTCAATTACGAAGAAGAATGACTTCAAGGTAGAAAACTTTGCATCATTGGTTGATGGAAAGGGAATATGGTTCTTGCTTGACTACTATTTTCGGCGAGAAGTTTGCTGTCCTTGTCTTCACGAAGAGGATCCTGGTGGTCAACAAGGCCCTCGATCAGTAATGTCCAATACCGATTATCATGATGCAGTTCAGAACTTCATTCTGTCGCAAAAGTTGACAGCACTTTTGGGAAGTTTTCCTGAGGTTCTACAGATTGGGGACCTACTGGAACATAATGCAGTTGTTAGCAATCAAAGTGTGATTATACTGTTGGCTTTCTTATCATCAAAGCTGATCGTCAAGGAGAATATGGAGAAACTGAACTTTCATAAGTTGCTGTGCTCTAGCTGTCAAGATCAAGAGAAGAGATATTCGCGCATCAGTTGCAGCATCTCTGAAGCAGTTAGAAATGAGGAACCGGACAGAGAAAACGGAGAAGATGCTACTAAAACTTTCCAGGCAATCAAAGCCTGGTGGCAGGAAATGGCCTACCAAAATTCTGTTGGAGAAGTTAGTAGCCGTACCCCGCAGGGTTCCTTGTCTAGGAAAATCACTATGGATTTCGAACGAGAAGCAGCAGTAGTCATACAATCGAATTTCAGGGGACTTCATGCACGCCGCAAGTTTAGGAAGAAATTGAAAGAAGTCTGCTTCTTACAAGCTGCTATTCGGACATGGTTGTCAGTGAAACATATAAAAGTTCTTGAAATATTCACTGTTGAGGAAGTTACTTTACAGTTATCAGAAAGATCGGCCAACTTAAAATCTGTAGCGAGATATGTCAAGTACATTGTTGAACGGAGTCGCTTCCTCAAGTTGAGGAAATCTGTTTTGGTCATTCAGAAAGCTGTAAGGCGGCATCAGCGAAACCTTCATCATGAGCTGAAAGCAGCACTCAAAATTCAGCAAGCTTGGAGGAGTTATAAAGACAAAGTTATCTCTTCTATCACTATCCAATCTTATGTTCGTGGATGGATCACACGGAGAATGTATATCAATTACAAATTGTGTTCCGTACTCATTCAAAGAGCTGTAAGGAAGCATCAGTGGAACCTTCATCATGAGATGAAAGCACAAGTTATCTCCTCTATCACCATCCAATCTTATGTTCGTGGATGGAACACACGTAGAATGAATCGCAAATACAAGTTGTCTTCCGTACTCATTCAAAGATATTGCCGTGGTTGGCTGGCGAGAAGGAAGTTTTATCTTCAGAGAAAAGCAACAATATGCATTCAGAGTGCTATCCGAAAATTTAACTGCATTATGTCGTTTCATGGCTACAAGCATGCAGCCACAGAGCTTCAACGGCTCGTTAGAGGACAAATTGTTCGAAGCAGGCTTCAAGGAGCTTCTTATCTCAATTCAAAACTTGACGAAGGCGTTTCCAGACTTCCACAACACAGCGTTGAGATGACAACACAGCTACATTCCGTCATTAAACTGCAGCGTTGGTGGAGGTTTCTCCATTCACAGAATGTAAGAAGAAAATCAGCAGTCTTGATACAGCGGCATATTCGAGGTGTATTTGCCAGGCAAAGAACTTCAATGGAAAGACGTTACATTGTCATGATTCAATCACACTGGAGAGGCTACCTCACACGCAAAGCTGCAAAGGCTCAAGTTCTGGATCTGAGAGTAAGAATGCAAACTTCTGCAGCAAACATAGATGACAAGAAACGCTTGATAAACAAGCTTCTCTCTGCGCTTTCGGAACTACTCAGCATGAAAAAGGTCCACAACATTCTTCACATTTGTGAAACTCTGGATTCGGCGACAAAGTACTCTGACAAATGCTGTGAAGAGCTTGTGGCAGCTGGAGCTATAGACAAGTTGCTAACACTGATCCGGTCTGCAAGCAGAAGCATACCTGATCAAGAAGTTTCAAAACATGCACTTTCAACTTTGAGACACCTGGCTCGTTACCCACAAATGGCAGATGAGTTAATAGACACGAAAGGATCTATCCAGACAATTTTCTGGGAACTACTCAGGAACAAAGAAGAAGCATATTTCATAGCATCAGATGTTCTGAAGAAGATATGCAAAAGCCAAAAAGGCGTAGAAGCAGTTCGAAAGCTTCCTGCTTTGGTTAAGCGATTACACGCCTTAGTTGAGGAGCTAACTCGTAAGGCAAACATGGAGAAGAGGAATGTTAAGGGTCAGGGTGGAAAAGAAAAGAGCGAGAGAAGATTAAAGGAGGCTGTTGAGCTTCTGAAGCTCATAACCAGCAGATGA
Protein:  
MNEENEPTCATPATRPRNPPSSHFTDISNFKTPRRPSVIKSNLGNTPQFFTASKQTPKSMSSTFRRPSLLPTHASRSKVAASSRRLRAFELQQSQSSRKAELNKEKSLRSLAKSLTVWLNFLFENPESCGCDPLENGSAVGSVGNAKRDSCEALRSGKSVGVDTMWRSPKKSRTLGWCGEKGSSLSGSKYSTLRESLKEVCSLDDLKQRMQFHLSLGSCKEIFDVMTRVTKNIDEGRIKMKPQCLLVTDFGLKEKAVKALMCYNQVWLRLGLYIIFGGDSFLCDSEVNSDQETAFLKMVINKQFFSHDGLARAFAYNKMVEGLYRPGYYEALGTVILKRILLLVLILDRAKSQSCISLKYGIDGIDGGSPLLFSEKSSLKSSHQLLSELLPSDVMHGEGNLLAHLVIIGYKIPYQQSPIAEYEFRVRDLFGDLQDGVRLCRAIQLLLHDPSILTKMVVPSDNRKKKLANCRVALQYLKDAGVSLKDDEGMMITIEDVADGDRELSISLLWNIFVHLQLPLLINGKLLTEEIYKVQGLEQNNQIIMATPLEMLLNWIQSITKKNDFKVENFASLVDGKGIWFLLDYYFRREVCCPCLHEEDPGGQQGPRSVMSNTDYHDAVQNFILSQKLTALLGSFPEVLQIGDLLEHNAVVSNQSVIILLAFLSSKLIVKENMEKLNFHKLLCSSCQDQEKRYSRISCSISEAVRNEEPDRENGEDATKTFQAIKAWWQEMAYQNSVGEVSSRTPQGSLSRKITMDFEREAAVVIQSNFRGLHARRKFRKKLKEVCFLQAAIRTWLSVKHIKVLEIFTVEEVTLQLSERSANLKSVARYVKYIVERSRFLKLRKSVLVIQKAVRRHQRNLHHELKAALKIQQAWRSYKDKVISSITIQSYVRGWITRRMYINYKLCSVLIQRAVRKHQWNLHHEMKAQVISSITIQSYVRGWNTRRMNRKYKLSSVLIQRYCRGWLARRKFYLQRKATICIQSAIRKFNCIMSFHGYKHAATELQRLVRGQIVRSRLQGASYLNSKLDEGVSRLPQHSVEMTTQLHSVIKLQRWWRFLHSQNVRRKSAVLIQRHIRGVFARQRTSMERRYIVMIQSHWRGYLTRKAAKAQVLDLRVRMQTSAANIDDKKRLINKLLSALSELLSMKKVHNILHICETLDSATKYSDKCCEELVAAGAIDKLLTLIRSASRSIPDQEVSKHALSTLRHLARYPQMADELIDTKGSIQTIFWELLRNKEEAYFIASDVLKKICKSQKGVEAVRKLPALVKRLHALVEELTRKANMEKRNVKGQGGKEKSERRLKEAVELLKLITSR